Publications from the Dpn Lab, IISc

  1. Bhagawat Chandrasekar, Mukta Deobagkar-Lele, Emmanuel S. Victor and Dipankar Nandi
    Regulation of chemokines, CCL3 and CCL4, by Interferon-gamma and Nitric oxide synthase 2 in mouse macrophages and during Salmonella enterica Serovar Typhimurium infection
    Journal of Infectious Diseases (2013)  - in press, doi: 10.1093/infdis/jit067
  1. Mukta Deobagkar-Lele, Suni Chacko, Emmanuel Victor, Jayachandra Kadthur and Dipankar Nandi
    Interferon  and glucocorticoid mediated pathways synergize to enhance death of CD4+CD8+ thymocytes during Salmonella enterica serovar Typhimurium infection.
    Immunology (2013) – in press, doi: 10.1111/imm.12047
  1. Manoj Bhosale,Anujith Kumar, Mrinmoy Das, Chetana Bhaskarla, Vikas Agarwal and Dipankar Nandi
    Catalytic activity of Peptidase N is required for adaptation of Escherichia coli to nutritional downshift and high temperature stress.
    Microbiological Research (2013) 168: 56-64
  1. Rekha Gautam, Bhagawat Chandrasekar, Mukta Deobagkar-Lele, Srabanti Rakshit, Vinay Kumar B. N., Siva Umapathy and Dipankar Nandi
    Identification of Early Biomarkers during Acetaminophen-induced Hepatotoxicity by Fourier Transform Infrared Microspectroscopy
    PLoS ONE (2012) 7: e45521. doi:10.1371/journal.pone.0045521
  1. Bhawana Singh, Rekha Gautam, Srividya Kumar, Vinay BN Kumar, Upendra Nongthomba, Dipankar Nandi, Geetashree Mukherjee, Vani Santosh, Kumaravel Somasundaram, and Siva Umapathy
    Application of vibrational microspectroscopy to biology and medicine
    Current Science (2012) 102: 232-244
  1. Manoj Bhosale, Jaychandra C. Kadthur and Dipankar Nandi
    Roles of Salmonella enterica serovar Tyhimuirum encoded Peptidase N during systemic infection of Ifn-/- mice
    Immunobiology (2012) 217: 354-362
  1. Srabanti Rakshit, Manikandan Ponnusamy, Sumitha Papanna, Banishree Saha, Asma Ahmed and Dipankar Nandi
    Immunotherapeutic efficacy of Mycobacterium indicus pranii in eliciting anti-tumor T cell responses: critical roles of IFNγ
    International Journal of Cancer (2012) 130: 865-875
  1. Manimala Sen, Bhavin Shah, Srabanti Rakshit, Vijender Singh, Bhavna Padmanabhan, Manikandan Ponnusamy, Koteppa Pari, Ram Vishwakarma, Dipankar Nandi and Parag P. Sadhale
    UDP-glucose 4, 6-dehydratase Activity Plays an Important Role in Maintaining Cell Wall Integrity and Virulence of Candida albicans.
    PLoS Pathogens 7(11): e1002384. doi:10.1371/journal.ppat.1002384
  1. Asma Ahmed, Sambudhho Mukherjee, Mukta Deobagkar, Tanushree Naik and Dipankar Nandi
    Rapid burst of H2O2 by plant growth regulators increases intracellular Ca2+ amounts and modulates CD4+ T cell activation
    International Immunopharmacology (2010) 10: 1397 - 1405
  1. Manoj Bhosale, Samay Pande, Anujith Kumar, Subhash Kairamkonda and Dipankar Nandi
    Characterization of two M17 family members in Escherichia coli, Peptidase A and Peptidase B.
    BiochemBiophys Res Commun. (2010) 395: 76 – 81

  2. Banishree Saha, S. Jyothi Prasanna, Bhagawat Chandrasekar and Dipankar Nandi
    Gene modulation and immunoregulatory roles of Interferon-gamma.
    Cytokine (2010) 50: 1 – 14

  3. Banishree Saha and Dipankar Nandi
    Farnesyltransferase inhibitors reduce Ras activation and ameliorate acetaminophen-induced liver injury in mice.
    Hepatology (2009) 50: 1547 – 1557

  4. Asma Ahmed, Sambuddho Mukherjee, and Dipankar Nandi
    Intracellular concentrations of Ca2+ modulate the strength of signal and alter the outcomes of CTLA4 (CD152)-CD80/CD86 interactions in CD4+ T lymphocytes.
    Immunology (2009) 126: 363 – 377

  5. Anujith Kumar, Manoj Bhosale, Surendranath Reddy, N. Srinivasan and Dipankar  Nandi
    Importance of non-conserved distal carboxyl terminal amino acids in two peptidases belonging to the M1 family: ThermoplasmaacidophilumTricorn interacting factor F2 and Escherichia coli Peptidase N.
    Biochimie (2009) 91: 1145 – 1155

  6. Anujith Kumar, Surendranath Reddy, N. Srinivasan and Dipankar Nandi
    Interaction between two residues in the inter-domain interface of Escherichia coli Peptidase N modulates catalytic activity.
    Peptides and Protein Letters (2009) 16: 415 - 422 

  7. Veerupaxagouda Patil, Anujith Kumar, Sanjana Kuruppath and Dipankar Nandi
    Peptidase N encoded by Salmonella enterica serovar Typhimurium modulates     systemic infection in mice.
    FEMS Immunology & Medical Microbiology (2007) 51: 431 – 442

  8. Anujith Kumar and Dipankar Nandi
    Characterization and role of Peptidase N from Salmonella entericaserovar    Typhimurium.
    BiochemBiophys Res Commun. (2007) 353: 706 - 712

  9. S. Jyothi Prasanna, Banishree Saha and Dipankar Nandi
    Involvement of oxidative and nitrosative stress in modulation of gene expression and functional responses by Interferon-gamma.
    International Immunology (2007) 19: 867 – 879

  10. Sambuddho Mukherjee, Asma Ahmed, Shruti Malu and Dipankar Nandi
    Modulation of cell cycle progression by CTLA4-CD80/CD86 interactions on CD4+T cells depends on strength of the CD3 signal: critical role for IL-2.
    J. LeukocyteBiology (2006) 80: 66 - 74

  11. Dipankar Nandi, Pankaj Tahiliani, Anujith Kumar and Dilip Chandu
    The ubiquitin-proteasome system.
    J. Bioscience (2006) 31: 101 - 119

  12. Sambuddho Mukherjee, Asma Ahmed and Dipankar Nandi
    CTLA4-CD80/CD86 interactions on primary mouse CD4+ T cells integrate signal strength information to modulate activation with Concanavalin A.
    J. Leukocyte Biology (2005) 78: 144 - 157

  13. Pankaj Tahiliani, M. Mohan Kumar, Dilip Chandu, Anujith Kumar, C. Nagaraj and Dipankar Nandi
    Gel purified LipL32: a prospective antigen for detection of Leptospirosis.
    Journal of Postgraduate Medicine (2005) 51: 164 -168

  14. Dilip Chandu and Dipankar Nandi
    Comparative genomics and functional roles of ATP-dependent proteases, Lon and  Clp, during cytosolic protein degradation.
    Research in Microbiology (2004) 155: 710 - 719

  15. S. Jyothi Prasanna and Dipankar Nandi
    The MHC encoded class I molecule, H-2Kk, demonstrates distinct requirements of assembly factors for cell surface expression: roles of TAP, TAPasin and beta2 microglobulin.
    Molecular Immunology (2004) 41: 1029 - 1045

  16. Dilip Chandu and Dipankar Nandi
    PepN is the major aminopeptidase in Escherichia coli: insights on substrate specificity and role during sodium salicylate-induced stress.
    Microbiology (2003) 149: 3437 - 3447

  17. Dilip Chandu, Anujith Kumar and Dipankar Nandi
    PepN, the major Suc-LLVY-AMC hydrolyzing enzyme in Escherichia coli, displays functional similarity with downstream processing enzymes in archaea and eukarya: implications in cytosolic protein degradation.
    J. Biol. Chem. (2003) 278: 5548 - 5556

  18. Shruti Malu, Srividhya Srinivasan, Prasanta K. Maiti, Deepa Rajagopal, Beena John and Dipankar Nandi
     IFN-gamma bioassay: development of a sensitive method by measuring nitric oxide production by peritoneal exudate cells from C57BL/6 mice.
    J. Immunological Methods (2003) 272: 55 - 65

  19. Dilip Chandu and Dipankar Nandi
    From proteins to peptides to amino acids: comparative genomics of enzymes involved in downstream events during cytosolic protein degradation.
    Applied Genomics and Proteomics (2002) 4: 235 – 252

  20. Sambuddho Mukherjee, Prasanta K. Maiti and Dipankar Nandi
    Role of CD80, CD86 and CTLA4 on mouse CD4+ T lymphocytes in enhancing cell cycle progression and survival after activation with PMA and Ionomycin.
    J. Leukocyte Biology (2002) 72: 921 - 931

  21. Dipankar Nandi and Apurva Sarin
    Trends in basic immunology research – 2001 and beyond.
    Current Science (2001) 80: 647 – 652

Publications from Dipankar Nandi's Doctoral and Post Doctoral Research

  1. Laura A. Elenich, Dipankar Nandi, A. Elizabeth Kent, T. Scott McCluskey, Miguel  Cruz, Mohan N. Iyer, Elaine C. Woodward, Christopher W. Conn, Amber L. Ochao, David B. Ginsburg, and John J. Monaco
    The complete primary structures of mouse 20S proteasomes.
    Immunogenetics (1999) 49: 835 - 842 

  2. Dipankar Nandi, Kate Marusina, and John J. Monaco
    How do endogenous proteins become peptides and reach the ER?
    Curr. Top. Microbiol. Immunol. (1998) 232: 15 – 47

  3. Kimary Kulig, Dipankar Nandi, Igor Bacik, John J. Monaco, and Stanislav     Vukanovic
    Physical and functional association of MHC class I heavy chain alpha 3 domain with transporter associated with antigen processing.
    J. Exp. Med. (1998) 187: 865 – 874

  4. Tom Griffin, Dipankar Nandi, Miguel Cruz, Hans J. Fehling, Luc Van Kaer, John J. Monaco, and Robert A. Colbert
     Immunoproteasome assembly: co-operative incorporation of IFN-gamma inducible  subunits.
    J. Exp. Med. (1998) 187: 97 – 104

  5. Dipankar Nandi, Elaine Woodward, David Ginsburg, and John J. Monaco
    Intermediates in the formation of 20S proteasomes: Implications for the assembly of  precursor beta subunits.
    EMBO J. (1997) 16: 5363 – 5375

  6. John J. Monaco, Dipankar Nandi, Kate Marusina, Mohan Iyer, and Haibo Jiang
    Function and polymorphism of MHC genes in class I antigen processing.
    HLA and Disease -The Molecular Basis, Alfred Benzon Symposium (1997)40:91 – 95

  7. Miguel Cruz, Dipankar Nandi, Klavs B. Hendil, and John J. Monaco
    Cloning and characterization of mouse Lmp3 cDNA, encoding a proteasome beta subunit.
    Gene (1997) 190: 251 – 256

  8. Manuel E. Baldeón, David J. Neese, Dipankar Nandi, John J. Monaco, and H.Rex Gaskins
    Interferon-gamma independently activates the MHC class I antigen processing pathway and diminishes glucose responsiveness in pancreatic beta cell lines.
    Diabetes (1997) 46: 770 – 778

  9. Dipankar Nandi, Mohan N. Iyer, and John J. Monaco
    Molecular and serological analysis of polymorphisms in the murine major histocompatibility complex-encoded proteasome subunits, LMP-2 and LMP-7.
    Experimental and Clinical Immunogenetics (1996) 13: 20 - 29

  10. Dipankar Nandi, Haibo Jiang, and John J. Monaco
    Identification of MECL-1 (LMP10) as the third IFN-gamma-inducible proteasome  subunit.
    Journal of Immunology (1996) 156: 2361 - 2364

  11. John J. Monaco and Dipankar Nandi
    The genetics of proteasomes and antigen processing.
    Annual Review of Genetics (1995) 29: 729 - 754

  12. Dipankar Nandi, Jane A. Gross, and James P. Allison
    CD28-mediated costimulation is necessary for optimal proliferation of murine natural killer cells.
    Journal of Immunology (1994) 152: 3361 - 3369

  13. Dipankar Nandi and James P. Allison
    Characterization of neutrophils and T lymphocytes associated with the murine vaginal epithelium.
    Regional Immunology (1993) 5: 332 - 338

  14. Georges Leclercq, Jean Plum, Dipankar Nandi, Magda De Smedt and James Allison
    Intrathymic differentiation of Vgamma 3 T cells.
    Journal of Experimental Medicine (1993) 178: 309 – 315

  15. J. P. Allison, D. Asarnow, M. Bonyhadi, A. Carbone, W. Havran, D. Nandi and J. Noble
    Gamma delta T cells in the murine epidermis: origin, repertoire, and function.
    Advances in Experimental Medicine and Biology (1991) 292: 63 – 69

  16. DipankarNandiandJamesP. Allison
    Phenotypic analysis and gamma delta T cell repertoire of murine T cells associated  with the vaginal epithelium.
    Journal of Immunology (1991) 147: 1773 – 1778